A heuristic approach using recurrent neural networks, specifically the gated recurrent unit (GRU), can achieve close to state-of-the-art results in molecular property prediction with 99+% fewer parameters than large graph-based or language models.
Transformer models have shown promising results for molecular property prediction tasks, but their effective implementation requires careful consideration of various architectural and training decisions.
fastprop is a deep learning framework that achieves state-of-the-art accuracy on molecular property prediction datasets of all sizes without sacrificing speed or interpretability.
AutoGNNUQ, an automated uncertainty quantification approach, leverages neural architecture search to generate an ensemble of high-performing graph neural networks, enabling accurate estimation of both aleatoric and epistemic uncertainties in molecular property predictions.